Quarterly UW Proteomics Resource Seminar Series

Next Quarterly UWPR Seminar

Tues, May 30th, 2017, 4:30 - 6 pm
Foege Auditorium
Refreshments outside the Auditorium at 4:15pm

  • Jay Heinecke, MD
    Professor, Department of Medicine, Division of Metabolism, Endocrinology and Nutrition
    "TBA"

  • Member from Andy Hoofnagle's Lab
    TBA
    "TBA"

Future UWPR Seminars


Seminars will be held Tuesdays 4-6 pm, with refreshments served at 3:45pm
The main presentation should be around 30-40 min and the second presentation should be about 20-30 min.
Note the location may change based on room availability.

Seminar announcments are sent via the proteomics mail list,
subscribe to the proteomics mail list here

Date Location Main presenter (PI) Lab Member TBA
9/12/2017 SLU Matthew Bush, PhD Judit Villen's Lab
12/5/2017 Foege Stan Fields, PhD Shao En Ong's Lab
3/6/2018 SLU Tomas Vaisar, PhD Trisha Davis's Lab
5/29/2018 Foege Alejandro Wolf-Yadlin, PhD Matthew Bush's Lab
9/11/2018 SLU Andy Hoofnagle, MD PhD Mike MacCoss's Lab
12/4/2018 Foege Jim Bruce, PhD Stan Fields's Lab
3/5/2019 SLU Shao En Ong, PhD Jay Heinecke's Lab
5/28/2019 Foege Judit Villén, PhD Tomas Vaisar's Lab
9/10/2019 SLU Trisha Davis, PhD Alejandro Wolf-Yadlin's Lab
12/3/2019 Foege Mike MacCosss, PhD Andy Hoofnagle's Lab
3/3/2020 Foege Jay Heinecke, PhD Jim Bruce's Lab

Past UWPR Seminars


  • March 7th, 2017, 4 - 6 pm, Orin Smith Auditorium
    Trisha Davis, PhD, Professor and Chair of Biochemistry
    "Getting the most out of cross-linking"
    Juan Chavez, PhD , Research Scientist in Jim Bruce's Lab
    "Interactome dynamics by quantitative cross-linking mass spectrometry"

  • Dec. 6th, 2016, 4 - 6 pm, Foege North 130A
    Mike MacCoss, PhD, Professor - Genome Sciences
    "How do we make proteomics assays quantitative?"
    Alex Hu , Graduate Student in the Wolf-Yadlin and Noble lab
    "A regression model to deconvolve data-independent acquisition mass spectra for peptide identification."

  • Sep. 13th, 2016, 4 - 6 pm, SLU Orin Smith Auditorium
    Judit Villén, PhD, Assistant Professor, Genome Sciences
    "TBA"
    Anthony Raubitschek MD PhD , Resident Physician, Internal Medicine, UW (Vaisar Lab collaborator)
    "Atherosclerotic Plaque Proteomics in Murine uPA-Overexpression Model and Human Carotid Plaques."

  • Cancelled: May, 31st, 2016, 4 - 6 pm, Foege Auditorium S060

  • March, 1st, 2016, 4 - 6 pm, SLU Orin Smith Auditorium
    Shao En Ong, PhD, Assistant Professor, Pharmacology
    "Kinome Analyses in Cancer"
    Yi He, PhD , Postdoctoral Fellow from the Heinecke Lab
    "Insights into lipoprotein structure-function relationship using cross-linking mass spectrometry"

  • Dec. 1st, 2015, 4 - 6 pm, SLU Orin Smith Auditorium
    Jim Bruce, PhD, Professor, Genome Sciences
    "The quantitative interactome: edging across a functional landscape"
    Ben Jester, PhD , Postdoctoral Fellow from the Fields Lab
    "A General Strategy to Create Biosensors for Small Molecules"

  • Sept. 15th, 2015, 4 - 6 pm, Foege North 130A
    Andy Hoofnagle, MD PhD, Associate Professor, Laboratory Medicine
    "Calibration and Validation: Dirty Words that Help the Masses"
    Brian C. Searle , Graduate Research Assistant in the MacCoss Lab
    "Using DIA to predict high-responding peptides for targeted proteomics experiments"

  • May 26th, 2015, 4 - 6 pm, SLU Orin Smith Auditorium
    Alejandro Wolf-Yadlin, PhD, Assistant Professor of Genome Sciences
    "Molecular Mechanisms behind Kaposi Herpes Sarcoma Virus Latent Infection"
    Samuel Marionni , Graduate Research Assistant in the Bush Lab
    "Native Ion Mobility Mass Spectrometry Results as Constraints for Structural Modeling of Conformationally Heterogenous Complexes"

  • March 3rd, 2015, 4 - 6 pm, Foege North 130A
    Tomas Vaisar, PhD, Research Associate Professor of Medicine
    "Quantitative proteomics of high density lipoprotein in cardiovascular diagnostics."
    Michael Hoopmann, PhD, Software Engineer, ISB; Collaborator with Davis lab
    "Efficient analysis of chemically cross-linked peptide spectra"

  • Dec 2nd, 2014, 4 - 6 pm, SLU Orin Smith Auditorium
    Stanley Fields, PhD, HHMI Investigator, Professor, Genome Sciences
    "Massively parallel functional analysis of BRCA1 RING domain variants"
    Martin Golkowski, PhD, Postdoctoral Fellow in the Ong Lab
    "Kinome-centric phosphoproteomics to study GPCR signalling networks"

  • Sept. 9, 2014, 4 - 6 pm, Foege North 130A
    Matthew Bush, PhD, Assistant Professor Dept. of Chemistry
    "Ion Mobility Mass Spectrometry of Intact Protein Complexes"
    Miguel Martin-Perez, PhD, Postdoctoral Fellow in the Villén Lab
    "Tracing metabolic labelling in prototroph organisms for protein turnover analyses"

  • June 3, 2014, 4 - 6 pm, SLU Brotman Auditorium
    Graziella Ronsein, PhD Postdoc Fellow in the Heinecke Lab
    "Quantitative analysis of candidate HDL protein biomarkers for human disease"
    Devin Schweppe, PhD, Postdoc Fellow in the Bruce Lab
    "Proteomic identification of interspecies host-pathogen interactions by protein crosslinking: Acinetobacter baumannii infection of human lung epithelia"

  • March 4, 2014, 4 - 6 pm, SLU Orin Smith Auditorium
    Michael MacCoss, PhD Associate Professor, Genome Sciences
    "Improving the Robustness and Reproducibility of Mass Spectrometry Based Proteomics"
    Clark Henderson, PhD, Postdoc Fellow in the Hoofnagle Lab
    "Quantifying Clinically Relevant Biomarkers of Cardiovascular Disease in Dried Blood Spots"

  • Dec. 10, 2013, 4 - 6 pm, Foege North 130A
    Trisha Davis, PhD Professor - Biochemistry
    "Crosslinking as a probe of protein structure: Gamma-tubulin complex as a test case"
    Nathan Camp, PhD, Postdoc Fellow in the Wolf-Yadlin Lab
    "What is a Cancer stem cell? Phosphoproteomic analysis of Glioblastoma stem cell models"

  • Sept. 10, 2013, 4 - 6 pm, SLU Orin Smith Auditorium
    Judit Villén, PhD Assistant Professor, Genome Sciences
    "PROTEIN PHOSPHORYLATION IN CELLULAR SIGNALING AND DEGRADATION"
    Tomas Vaisar, PhD, Research Associate Professor of Medicine
    "HDL and cardiovascular disease; targeted quantitative proteomics in translational research"

  • June 4, 2013, 4 - 6 pm, SLU Orin Smith Auditorium
    Shao En Ong, PhD Assistant Professor, Pharmacology
    "Quantitative proteomics to identify novel protein-DNA interactions"
    Patrick Hutchins, PhD, Postdoc Fellow in the Heinecke Lab
    "HDL in the prediction of heart disease risk"

  • March 5, 2013, 4 - 6 pm, Foege Auditorium S060
    Jim Bruce, PhD Professor, Genome Sciences
    "Protein Structures and Interaction Networks: Identifying Links"
    Griffin Kim, PhD, Postdoc Fellow in the Fields Lab
    "High Throughput Analysis of Protein Stability"

  • Dec. 4, 2012, 4 - 6 pm, SLU Orin Smith Auditorium
    Andy Hoofnagle, PhD Assistant Professor, Laboratory Medicine
    "Quantifying Proteins by LC-MS/MS in Clinical Samples"
    Sonia Ting, Member from the MacCoss Lab
    "Hypothesis-Driven Analysis: A New Concept for Investigating Tandem Mass Spectrometry Data"

  • Sept. 11, 2012, 4 - 6 pm, Foege Auditorium S060
    Alejandro Wolf-Yadlin, PhD Assistant Professor, Genome Sciences
    "NA"
    Alex Zelter, PhD, Member from the Davis Lab
    "Identification of chemically crosslinked peptides by mass spectrometry: An analysis of the yeast gamma-tubulin complex"

Proteomics Symposium schedule, May 18, 2012

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